- Capabilities
- Interactive, Read, Write
- Category
- Data
- Developer
- OpenAI
- Website
- (opens in a new window)
How it works
A journey-oriented NGS workbench for FASTQ QC, bulk RNA-seq, and single-cell RNA-seq. Focused skills establish the user's starting point, design toward a scientific outcome, bind that design to live Nextflow/nf-core or Snakemake capabilities, preserve checksum-bound native approval, and interpret completed results from file-backed evidence.
What else can you do?
Review sequencing quality
NGS Analysis Workbench Inspect these sequencing inputs and clarify the analysis goal. Choose a supported QC workflow, check prerequisites, and interpret the completed reports with saved artifacts.
Plan RNA sequencing analysis
NGS Analysis Workbench Review this bulk RNA-seq study's inputs and design. Recommend a supported analysis workflow, identify missing metadata, and explain checks needed before execution.
Interpret sequencing results
NGS Analysis Workbench Review these completed sequencing-analysis outputs. Summarize quality issues and results, distinguish findings from assumptions, and reference the supporting files.
What’s included
Skills
- Design NGS Analysis
- NGS Analysis Workbench
- Run NGS Analysis
- Understand NGS Data
- Understand NGS Results
Resources
Add the NGS Analysis Workbench plugin in a few clicks
Availability depends on the plugin, your plan, and workspace settings. Some connections require admin setup or approval. Contact your workspace admin if access is blocked.
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