Life Sciences NGS Analysis
Guided NGS routing and local execution for sequencing analysis
- Capabilities
- Interactive, Read, Write
- Category
- Education
- Developer
- OpenAI
- Website
- (opens in a new window)
How it works
A guided intake, routing, and execution plugin for next-generation sequencing workflows. It helps Codex inspect local sequencing inputs, ask only the missing assay-specific questions, choose public or freely accessible runtime-installable packages where possible, check existing tool availability before any install, and execute supported local workflows with validation, logs, manifests, QC reports, and artifact indexes. It includes deeper decision skills for BCL demultiplexing, FASTQ QC execution and interpretation, germline, somatic and UMI-panel DNA variants, bulk RNA-seq count generation and differential expression, ATAC-seq, ChIP-seq/CUT&RUN/CUT&Tag, and embedded post-count scRNA-seq QC.
What else can you do?
Review sequencing quality
Life Sciences NGS Analysis Inspect these sequencing inputs and clarify the analysis goal. Choose a supported QC workflow, check prerequisites, and interpret the completed reports with saved artifacts.
Plan RNA sequencing analysis
Life Sciences NGS Analysis Review this bulk RNA-seq study's inputs and design. Recommend a supported analysis workflow, identify missing metadata, and explain checks needed before execution.
Interpret sequencing results
Life Sciences NGS Analysis Review these completed sequencing-analysis outputs. Summarize quality issues and results, distinguish findings from assumptions, and reference the supporting files.
What’s included
Skills
- Amplicon Microbiome
- NGS Router
- ATAC-seq Peaks QC
- BCL to FASTQ
- Bulk RNA-seq
- Bulk RNA-seq Counts
- Bulk RNA-seq DE
- ChIP/CUT&RUN Peaks QC
- 10 more
Resources
Add the Life Sciences NGS Analysis plugin in a few clicks
Availability depends on the plugin, your plan, and workspace settings. Some connections require admin setup or approval. Contact your workspace admin if access is blocked.
